PDB-ID:	1F8V at or
Vdb Entry Key:	48
Resolution:	3.00 Å
Swiss-Prot:
Family:	Nodaviridae: Description \| Taxonomy
Genus:	Alphanodavirus: Description \| Taxonomy
Genome:	ssRNA positive-strand viruses
Host:	NA
Method:	X-RAY DIFFRACTION
T Number:	3
# of Subunits:	180
Net Surface Charge:	+120 e (per virion) ?
Outside SASA:	18,997.0 Å² X 60 ?
Radius (Å):	Outer: 175.0 Ave: 172.0 Inner: 98.0 ?
Diameters (Å)	Outer: 350.0 Ave: 344.0 Inner: 196.0 ?
Spherical Volume (Å³)	Outer: 22,449,297.5 ? Ave: 21,314,441.1 Inner: 3,942,455.8
Primary Citation: Pubmed Abstract The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA. Tang, L., Johnson, K.N., Ball, L.A., Lin, T., Yeager, M. & Johnson, J.E. Nat.Struct.Biol. (2001) 8:77.

Crystal Information
References

Download:

Primary Sequence

PDB Header

PDB to Viper matrix

Download VIPER (IAU)
coordinates [158 Kb]

Display VIPER coordinates

Full capsid [10 MB]

Half capsid [5 MB]

Lattice (cage) [1 Kb]

IFMSA: HTML | Clustal
PIR | VDB

click to open

(introduction to STRAP)

IAU (ASU)

Surface View

Structure Classification, Surface Topography, MMDB:

Different representations of the viral capsid (1f8v)

Rendered Surface Rendered with TexMol Interactive 3D (Download Viewer)	T = 3 Lattice	Subunit Organization rendered with Chimera

Click on images to enlarge. Information about these graphics How were surfaces calculated?

Want some more information on how these templates are constructed? Check this out.

S-Score

vs 2) 0.000

Showing interface residues

SHOW & HIDE

Select:

Res. Type

COLOR BY

RESIDUE INFO

Mouse over marks to show Residue Info here

View

Φ-Ψ Maps Description

Please cite the manuscript:
Carrillo-Tripp, D. J. Montiel-Garcia, C. L. Brooks, 3rd, V. S. Reddy, CapsidMaps: protein-protein interaction pattern discovery platform for the structural analysis of virus capsids using Google Maps. Journal of structural biology 190, 47-55 (2015)

Color Chart

Accessible Surface Profiles

Contact Tables

Association Energies

Q-Scores

Construct an Oligomer of this Virus

Map a residue on this Virus

Secondary Structure Info

How were these computed?