PDB-ID:	3IYS at or
Vdb Entry Key:	491
Resolution:	11.30 Å
Swiss-Prot:
Family:	Polyomaviridae: Description \| Taxonomy
Genus:	Polyomavirus: Description \| Taxonomy
Genome:	dsDNA
Host:	Animal
Method:	ELECTRON MICROSCOPY
T Number:	7d
# of Subunits:	360
Net Surface Charge:	-1500 e (per virion) ?
Outside SASA:	71,559.5 Å² X 60 ?
Radius (Å):	Outer: 255.0 Ave: 251.0 Inner: 175.0 ?
Diameters (Å)	Outer: 510.0 Ave: 502.0 Inner: 350.0 ?
Spherical Volume (Å³)	Outer: 69,455,901.2 ? Ave: 66,238,390.9 Inner: 22,449,297.5
Primary Citation: Pubmed Abstract The structure of avian polyomavirus reveals variably sized capsids, non-conserved inter-capsomere interactions, and a possible location of the minor capsid protein VP4. Shen, P.S., Enderlein, D., Nelson, C.D.S., Carter, W.S., Kawano, M., Xing, L., Swenson, R.D., Olson, N.H., Baker, T.S., Cheng, R.H., Atwood, W.J., Johne, R. & Belnap, D.M. Virology (2011) 411:142.

Crystal Information
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Primary Sequence

PDB Header

PDB to Viper matrix

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coordinates [36 Kb]

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Full capsid [2 MB]

Half capsid [1 MB]

Lattice (cage) [2 Kb]

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IAU (ASU)

Surface View

Structure Classification, Surface Topography, MMDB:

Different representations of the viral capsid (3iys)

Rendered Surface Rendered with TexMol Interactive 3D (Download Viewer)	T = 7d Lattice	Subunit Organization rendered with Chimera

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Φ-Ψ Maps Description

Please cite the manuscript:
Carrillo-Tripp, D. J. Montiel-Garcia, C. L. Brooks, 3rd, V. S. Reddy, CapsidMaps: protein-protein interaction pattern discovery platform for the structural analysis of virus capsids using Google Maps. Journal of structural biology 190, 47-55 (2015)

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Secondary Structure Info

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