cryo-EM reconstruction of West Nile virus
cryo-EM reconstruction of West Nile virus Times Viewed: 7
PDB-ID: 3J0B at or
Vdb Entry Key: 1079
Resolution: 10.30 Å
Swiss-Prot:
Family: Flaviviridae: Description | Taxonomy
Genus: Flavivirus: Description | Taxonomy
Genome: ssRNA
Host: Human
Method: ELECTRON MICROSCOPY
T Number: 3
# of Subunits: 180
Net Surface Charge: -60 e (per virion) ?
Outside SASA: 34,743.2 Ų X 60 ?
Radius (Å): Outer: 243.0 Ave: 236.0 Inner: 199.0 ?
Diameters (Å)Outer: 486.0 Ave: 472.0 Inner: 398.0 ?
Spherical Volume (ų)Outer: 60,104,561.1 ?
Ave:    55,058,530.8
Inner:  33,010,175.9
Primary Citation: Pubmed Abstract
Membrane curvature in flaviviruses.
Zhang, W., Kaufmann, B., Chipman, P.R., Kuhn, R.J. & Rossmann, M.G. J.Struct.Biol. (2013) 183:86.
IAU (ASU) Surface View
Structure Classification, Surface Topography, MMDB:

Different representations of the viral capsid (3j0b)





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T = 3 Lattice Subunit Organization
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Please cite the manuscript:
Carrillo-Tripp, D. J. Montiel-Garcia, C. L. Brooks, 3rd, V. S. Reddy, CapsidMaps: protein-protein interaction pattern discovery platform for the structural analysis of virus capsids using Google Maps. Journal of structural biology 190, 47-55 (2015)
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Families


By Family
Dengue Virus (1k4r)
Immature Dengue-2 Prm Virus (1n6g)
THE STRUCTURE OF IMMATURE YELLOW FEVER VIRUS PARTICLE (1na4)
Dengue Virus (1p58)
THE STRUCTURE OF IMMATURE DENGUE VIRUS AT 12.5 ANGSTROM (1tge)
Dengue Virus (1thd)
STRUCTURE OF IMMATURE WEST NILE VIRUS (2of6)
Fit of E protein and Fab 1A1D-2 into 24 angstrom resolution cryoEM map of Fab complexed with dengue (2r6p)
The pseudo-atomic structure of dengue immature virus (3c6d)
LOW PH IMMATURE DENGUE VIRUS (3c6r)
WEST NILE VIRUS IN COMPLEX WITH FAB FRAGMENTS OF MAB CR4354 COORDINATES OF ENVELOPE PROTEINS AND FAB (3iyw)
CRYOEM STRUCTURE OF DENGUE VIRUS (3j27)
Cryo-EM reconstruction of Dengue virus at 37 C (3j35)
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody (3j42)
CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 AT 28 DEGREES C (3j6s)
CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 AT 37 DEGREES C (3j6t)
CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 IN COMPLEX WITH ANTIBODY 5J7 FAB (3j6u)
CRYOELECTRON MICROSCOPY OF DENGUE-FAB E104 COMPLEX AT PH 5.5 (3j8d)
The structure of 'breathing' dengue virus. (3zko)
6A ELECTRON CRYOMICROSCOPY STRUCTURE OF IMMATURE DENGUE VIRUS SEROTYPE 1 (4b03)
Near-atomic resolution cryo-EM structure of Dengue serotype 4 virus (4cbf)
Dengue 1 cryo-EM reconstruction (4cct)
CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 2 STRAIN PVP94-07 COMPLEXED WITH HUMAN ANTIBODY 2D22 FAB (5a1z)
Zika virus E protein complexed with a neutralizing antibody Z23-Fab (5gzr)
CRYO-EM STRUCTURE OF ZIKA VIRUS COMPLEXED WITH FAB C10 AT PH 6.5 (5h30)
CRYO-EM STRUCTURE OF ZIKA VIRUS COMPLEXED WITH FAB C10 AT PH 5.0 (5h32)
CRYO-EM STRUCTURE OF ZIKA VIRUS COMPLEXED WITH FAB C10 AT PH 8.0 (5h37)
THE CRYO-EM STRUCTURE OF ZIKA VIRUS (5ire)
CRYO-EM STRUCTURE OF THERMALLY STABLE ZIKA VIRUS STRAIN H/PF/2013 (5iz7)
CRYO-EM STRUCTURE OF IMMATURE ZIKA VIRUS (5u4w)
A Human Antibody Against Zika Virus Crosslinks the E Protein to Prevent Infection (5uhy)
STRUCTURE OF JAPANESE ENCEPHALITIS VIRUS (5wsn)
By Genus
Dengue Virus (1k4r)
Immature Dengue-2 Prm Virus (1n6g)
THE STRUCTURE OF IMMATURE YELLOW FEVER VIRUS PARTICLE (1na4)
Dengue Virus (1p58)
THE STRUCTURE OF IMMATURE DENGUE VIRUS AT 12.5 ANGSTROM (1tge)
Dengue Virus (1thd)
STRUCTURE OF IMMATURE WEST NILE VIRUS (2of6)
Fit of E protein and Fab 1A1D-2 into 24 angstrom resolution cryoEM map of Fab complexed with dengue (2r6p)
The pseudo-atomic structure of dengue immature virus (3c6d)
LOW PH IMMATURE DENGUE VIRUS (3c6r)
WEST NILE VIRUS IN COMPLEX WITH FAB FRAGMENTS OF MAB CR4354 COORDINATES OF ENVELOPE PROTEINS AND FAB (3iyw)
CRYOEM STRUCTURE OF DENGUE VIRUS (3j27)
Cryo-EM reconstruction of Dengue virus at 37 C (3j35)
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody (3j42)
CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 AT 28 DEGREES C (3j6s)
CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 AT 37 DEGREES C (3j6t)
CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 IN COMPLEX WITH ANTIBODY 5J7 FAB (3j6u)
CRYOELECTRON MICROSCOPY OF DENGUE-FAB E104 COMPLEX AT PH 5.5 (3j8d)
The structure of 'breathing' dengue virus. (3zko)
6A ELECTRON CRYOMICROSCOPY STRUCTURE OF IMMATURE DENGUE VIRUS SEROTYPE 1 (4b03)
Near-atomic resolution cryo-EM structure of Dengue serotype 4 virus (4cbf)
Dengue 1 cryo-EM reconstruction (4cct)
CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 2 STRAIN PVP94-07 COMPLEXED WITH HUMAN ANTIBODY 2D22 FAB (5a1z)
Zika virus E protein complexed with a neutralizing antibody Z23-Fab (5gzr)
CRYO-EM STRUCTURE OF ZIKA VIRUS COMPLEXED WITH FAB C10 AT PH 6.5 (5h30)
CRYO-EM STRUCTURE OF ZIKA VIRUS COMPLEXED WITH FAB C10 AT PH 5.0 (5h32)
CRYO-EM STRUCTURE OF ZIKA VIRUS COMPLEXED WITH FAB C10 AT PH 8.0 (5h37)
THE CRYO-EM STRUCTURE OF ZIKA VIRUS (5ire)
CRYO-EM STRUCTURE OF THERMALLY STABLE ZIKA VIRUS STRAIN H/PF/2013 (5iz7)
CRYO-EM STRUCTURE OF IMMATURE ZIKA VIRUS (5u4w)
A Human Antibody Against Zika Virus Crosslinks the E Protein to Prevent Infection (5uhy)
STRUCTURE OF JAPANESE ENCEPHALITIS VIRUS (5wsn)
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