CRYO-EM RECONSTRUCTION OF BACTERIOPHAGE AP205 VIRUS-LIKE PARTICLES
CRYO-EM RECONSTRUCTION OF BACTERIOPHAGE AP205 VIRUS-LIKE PARTICLES Times Viewed: 35
PDB-ID: 5LQP at or
Vdb Entry Key: 1034
Resolution: 6.00 Å
Swiss-Prot:
Family: Leviviridae: Description | Taxonomy
Genus: Levivirus: Description | Taxonomy
Genome: ssRNA
Host: Bacteria
Method: ELECTRON MICROSCOPY
T Number: 3
# of Subunits: 180
Net Surface Charge: -240 e (per virion) ?
Outside SASA: 16,016.1 Ų X 60 ?
Radius (Å): Outer: 138.0 Ave: 136.0 Inner: 89.0 ?
Diameters (Å)Outer: 276.0 Ave: 272.0 Inner: 178.0 ?
Spherical Volume (ų)Outer: 11,008,442.3 ?
Ave:    10,536,717.5
Inner:  2,952,967.2
Primary Citation: Pubmed Abstract
Structure of Ap205 Coat Protein Reveals Circular Permutation in Ssrna Bacteriophages.
Shishovs, M., Rumnieks, J., Diebolder, C. & Jaudzems, K. J. Mol. Biol. (2016) 428:4267.
Crystal Information
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coordinates [47 Kb]
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Full capsid [3 MB]
Half capsid [1 MB]
Lattice (cage) [937 B]

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Different representations of the viral capsid (5lqp)


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 		T = 3 Lattice Subunit Organization
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Please cite the manuscript:
Carrillo-Tripp, D. J. Montiel-Garcia, C. L. Brooks, 3rd, V. S. Reddy, CapsidMaps: protein-protein interaction pattern discovery platform for the structural analysis of virus capsids using Google Maps. Journal of structural biology 190, 47-55 (2015)
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Secondary Structure Info

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Families


By Family
Bacteriophage MS2 Mutant (T59S)/RNA Operator (1aq3)
Bacteriophage MS2 Mutant (T45A)/RNA Operator (1aq4)
Bacteriophage MS2, Mutant P78N (1bms)
Bacteriophage PP7 (1dwn)
Bacteriophage MS2/RNA Hairpin (4One-5) (1dzs)
Bacteriophage MS2/RNA Hairpin (2One-5) (1e7x)
Bacteriophage FR (4 Residue Deletion FG Loop) (1fr5)
Bacteriophage FR (FR) (1frs)
Bacteriophage GA Protein Capsid (GA) (1gav)
Bacteriophage MS2/RNA Hairpin (C-7) (1gkv)
Bacteriophage MS2/RNA Hairpin (G-10) (1gkw)
Bacteriophage MS2/RNA Hairpin (C-10) (1kuo)
Bacteriophage MS2, Mutant E76D (1mst)
Bacteriophage MS2 Mutant T45A (1mva)
Bacteriophage MS2 Mutant T59S (1mvb)
Bacteriophage Qβ Capsid (QB) (1qbe)
Bacteriophage MS2/RNA Aptamer F5 (2-aminopurine at -10 pos.) (1u1y)
Bacteriophage MS2/19 nt. MS2 RNA Fragment (1zdh)
Bacteriophage MS2/19 nt. MS2 RNA Fragment (1zdi)
Bacteriophage MS2/8 nt. MS2 RNA Fragment (1zdj)
Bacteriophage MS2/23 nt. MS2 RNA Fragment (1zdk)
RNA stemloop from bacteriophage Qbeta complexed with an N87S mutant MS2 Capsid (1zse)
RNA stemloop operator from bacteriophage QBETA complexed with an N87S,E89K mutant MS2 capsid (2b2d)
RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsid (2b2e)
MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsid (2b2g)
Bacteriophage MS2/RNA Hairpin (5bru-5) Complex (2bu1)
MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX (2c4y)
MS2-RNA HAIRPIN (2SU-5-6) COMPLEX (2c4z)
MS2-RNA HAIRPIN (A-5) COMPLEX (2c50)
MS2-RNA HAIRPIN (G-5) COMPLEX (2c51)
Bacteriophage MS2 (MS2) (2ms2)
CRYSTAL STRUCTURE OF BACTERIOPHAGE PRR1 (2vf9)
CAULOBACTER BACTERIOPHAGE 5 - VIRUS-LIKE PARTICLE (2w4y)
CAULOBACTER BACTERIOPHAGE 5 (2w4z)
ICOSAHEDRAL PARTICLE OF COVALENT COAT PROTEIN DIMER OF BACTERIOPHAGE MS2 (2wbh)
SMALL RNA PHAGE PRR1 IN COMPLEX WITH AN RNA OPERATOR FRAGMEN (4ang)
THE STRUCTURE OF THE S37P MS2 VIRAL CAPSID ASSEMBLY. (4zor)
Asymmetric unit for the coat proteins of phage Qbeta (5kip)
Bacteriophage MS2/RNA Aptamer F5 (5msf)
Bacteriophage MS2/RNA Aptamer F6 (6msf)
Bacteriophage MS2/RNA Aptamer F7 (7msf)
By Genus
Bacteriophage MS2 Mutant (T59S)/RNA Operator (1aq3)
Bacteriophage MS2 Mutant (T45A)/RNA Operator (1aq4)
Bacteriophage MS2, Mutant P78N (1bms)
Bacteriophage PP7 (1dwn)
Bacteriophage MS2/RNA Hairpin (4One-5) (1dzs)
Bacteriophage MS2/RNA Hairpin (2One-5) (1e7x)
Bacteriophage FR (4 Residue Deletion FG Loop) (1fr5)
Bacteriophage FR (FR) (1frs)
Bacteriophage GA Protein Capsid (GA) (1gav)
Bacteriophage MS2/RNA Hairpin (C-7) (1gkv)
Bacteriophage MS2/RNA Hairpin (G-10) (1gkw)
Bacteriophage MS2/RNA Hairpin (C-10) (1kuo)
Bacteriophage MS2, Mutant E76D (1mst)
Bacteriophage MS2 Mutant T45A (1mva)
Bacteriophage MS2 Mutant T59S (1mvb)
Bacteriophage MS2/RNA Aptamer F5 (2-aminopurine at -10 pos.) (1u1y)
Bacteriophage MS2/19 nt. MS2 RNA Fragment (1zdh)
Bacteriophage MS2/19 nt. MS2 RNA Fragment (1zdi)
Bacteriophage MS2/8 nt. MS2 RNA Fragment (1zdj)
Bacteriophage MS2/23 nt. MS2 RNA Fragment (1zdk)
RNA stemloop from bacteriophage Qbeta complexed with an N87S mutant MS2 Capsid (1zse)
RNA stemloop operator from bacteriophage QBETA complexed with an N87S,E89K mutant MS2 capsid (2b2d)
RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsid (2b2e)
MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsid (2b2g)
Bacteriophage MS2/RNA Hairpin (5bru-5) Complex (2bu1)
MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX (2c4y)
MS2-RNA HAIRPIN (2SU-5-6) COMPLEX (2c4z)
MS2-RNA HAIRPIN (A-5) COMPLEX (2c50)
MS2-RNA HAIRPIN (G-5) COMPLEX (2c51)
Bacteriophage MS2 (MS2) (2ms2)
CAULOBACTER BACTERIOPHAGE 5 - VIRUS-LIKE PARTICLE (2w4y)
CAULOBACTER BACTERIOPHAGE 5 (2w4z)
ICOSAHEDRAL PARTICLE OF COVALENT COAT PROTEIN DIMER OF BACTERIOPHAGE MS2 (2wbh)
SMALL RNA PHAGE PRR1 IN COMPLEX WITH AN RNA OPERATOR FRAGMEN (4ang)
THE STRUCTURE OF THE S37P MS2 VIRAL CAPSID ASSEMBLY. (4zor)
Bacteriophage MS2/RNA Aptamer F5 (5msf)
Bacteriophage MS2/RNA Aptamer F6 (6msf)
Bacteriophage MS2/RNA Aptamer F7 (7msf)
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