HUMAN BOCAVIRUS 4
HUMAN BOCAVIRUS 4 Times Viewed: 22
PDB-ID: 5US9 at or
Vdb Entry Key: 1061
Resolution: 3.00 Å
Swiss-Prot:
Family: Parvoviridae: Description | Taxonomy
Genus: Bocaparvovirus: Description | Taxonomy
Genome: ssDNA
Host: Animal,Human
Method: ELECTRON MICROSCOPY
T Number: 1
# of Subunits: 60
Net Surface Charge: -600 e (per virion) ?
Outside SASA: 9,396.9 Ų X 60 ?
Radius (Å): Outer: 141.0 Ave: 141.0 Inner: 84.0 ?
Diameters (Å)Outer: 282.0 Ave: 282.0 Inner: 168.0 ?
Spherical Volume (ų)Outer: 11,742,104.7 ?
Ave:    11,742,104.7
Inner:  2,482,712.7
Primary Citation: Pubmed Abstract
Structural Insights Into Emerging Pediatric Pathogens Human Bocaparvoviruses.
Mietzsch, M., Kailasan, S., Garrison, J., Ilyas, M., Chipman, P., Kantola, K., Janssen, M.E., Spear, J., Sousa, D., McKenna, R., Brown, K., Soderlund-Venermo, M., Baker, T. & Agbandje-McKenna, M. J. Virol. (2017) ?:?.
Crystal Information
References
Download:
Primary Sequence
PDB Header
PDB to Viper matrix
Download VIPER (IAU)
coordinates [70 Kb]
Display VIPER coordinates
Full capsid [4 MB]
Half capsid [2 MB]
Lattice (cage) [2 Kb]

IFMSA: HTML | Clustal
                  PIR | VDB

click to open
(introduction to STRAP)
IAU (ASU) Surface View
Structure Classification, Surface Topography, MMDB:

Different representations of the viral capsid (5us9)


Rendered Surface
Rendered with TexMol
Interactive 3D (Download Viewer)
 		T = 1 Lattice Subunit Organization
rendered with Chimera

Click on images to enlarge. Information about these graphics How were surfaces calculated?

Want some more information on how these templates are constructed? Check this out.

S-Score
0.000
Showing interface residues
SHOW & HIDE

Select:


Res. Type
COLOR BY

RESIDUE INFO

Mouse over marks to show Residue Info here
View

Please cite the manuscript:
Carrillo-Tripp, D. J. Montiel-Garcia, C. L. Brooks, 3rd, V. S. Reddy, CapsidMaps: protein-protein interaction pattern discovery platform for the structural analysis of virus capsids using Google Maps. Journal of structural biology 190, 47-55 (2015)
Color Chart

Contact Tables
Association Energies
Q-Scores
Construct an Oligomer of this Virus
Map a residue on this Virus
Secondary Structure Info

How were these computed?

Sequence Viewer

Sequence Viewer

Families


By Family
Canine Panleukopenia Virus (1c8d)
Feline Panleukopenia Virus (1c8e)
Feline Panleukopenia Virus (1c8f)
Feline Panleukopenia Virus (1c8g)
Canine Parvovirus Strain D (pH 5.5) (1c8h)
PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA (1dnv)
Feline Panleukopenia Virus (1fpv)
Canine Parvovirus Strain D, Mutant A300D (1ijs)
Porcine Parvovirus (1k3v)
Adeno-Associated Virus (1lp3)
Mice Minute Virus (MVM), Strain I (1mvm)
Canine Parvovirus (1p5w)
Canine Parvovirus (1p5y)
B19 Parvovirus Capsid (1s58)
Structural Determinants of Tissue Tropism and In Vivo Pathogenicity for the Parvovirus Minute Virus (1z14)
STRUCTURAL DETERMINANTS OF TISSUE TROPISM AND IN VIVO PATHOGENICITY FOR THE PARVOVIRUS MINUTE VIRUS (1z1c)
Canine Parvovirus (2cas)
STRUCTURALLY MAPPING THE DIVERSE PHENOTYPE OF ADENO-ASSOCIATED VIRUS SEROTYPE 4 (2g8g)
Structure of Adeno-Associated virus serotype 8 (2qa0)
VIRUS LIKE PARTICLE OF L172W MUTANT OF MINUTE VIRUS OF MICE - THE IMMUNOSUPPRESSIVE STRAIN (2xgk)
Structure of AAV-DJ, a Retargeted Gene Therapy Vector: Cryo-Electron Microscopy at 4.5A resolution (3j1q)
Structure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20 (3j1s)
ELECTRON MICROSCOPY ANALYSIS OF A DISACCHARIDE ANALOG COMPLE RECEPTOR INTERACTIONS OF ADENO-ASSOCIAT (3j4p)
Canine Parvovirus complexed with Fab E (3jcx)
CRYSTAL STRUCTURE OF ADENO-ASSOCIATED VIRUS SEROTYPE 3B (3kic)
CRYSTAL STRUCTURE OF ADENO-ASSOCIATED VIRUS SEROTYPE 3B (3kie)
Crystal structure of Penaeus stylirostris densovirus capsid (3n7x)
STRUCTURE TO FUNCTION CORRELATIONS FOR ADENO-ASSOCIATED VIRU 1 (3ng9)
STRUCTURAL INSIGHTS OF ADENO-ASSOCIATED VIRUS 5. A GENE THER FOR CYSTIC FIBROSIS (3ntt)
Structural Characterization of the Dual Glycan Binding Adeno-Associated Virus Serotype 6 (3oah)
Crystal structure of Bombyx mori densovirus 1 capsid (3p0s)
STRUCTURAL STUDIES OF AAV8 CAPSID TRANSITIONS ASSOCIATED WIT ENDOSOMAL TRAFFICKING (3ra2)
STRUCTURAL STUDIES OF AAV8 CAPSID TRANSITIONS ASSOCIATED WIT ENDOSOMAL TRAFFICKING (3ra4)
STRUCTURAL STUDIES OF AAV8 CAPSID TRANSITIONS ASSOCIATED WIT ENDOSOMAL TRAFFICKING (3ra8)
STRUCTURAL STUDIES OF AAV8 CAPSID TRANSITIONS ASSOCIATED WIT ENDOSOMAL TRAFFICKING (3ra9)
Structural studies of AAV8 capsid transitions associated with endosomal trafficking (3raa)
STRUCTURE-FUNCTION ANALYSIS OF RECEPTOR-BINDING IN ADENO-ASSOCIATED VIRUS SEROTYPE 6 (AAV-6) (3shm)
STRUCTURE-FUNCTION ANALYSIS OF RECEPTOR-BINDING IN ADENO-ASS VIRUS SEROTYPE 6 (AAV-6) (3tsx)
STRUCTURAL CHARACTERIZATION OF ADENO-ASSOCIATED VIRUS SEROTY (3ux1)
Canine Parvovirus Strain D (4dpv)
STRUCTURAL CHARACTERIZATION OF H-1 PARVOVIRUS: COMPARISON OF INFECTIOUS VIRIONS TO REPLICATION DEFEC (4g0r)
STRUCTURAL CHARACTERIZATION OF H-1 PARVOVIRUS: COMPARISON OF INFECTIOUS VIRIONS TO REPLICATION DEFEC (4gbt)
THE STRUCTURE OF AAVRH32.33, A NOVEL GENE DELIVERY VECTOR (4iov)
CRYSTAL STRUCTURE OF ACHETA DOMESTICUS DENSOVIRUS (4mgu)
Structural annotation of pathogenic bovine Parvovirus-1 (4qc8)
THE STRUCTURE OF THE NEUROTROPIC AAVRH.8 VIRAL VECTOR (4rso)
STRUCTURE-FUNCTION ANALYSIS OF RECEPTOR-BINDING IN ADENO-ASSOCIATED VIRUS SEROTYPE 6 (AAV-6) (4v86)
Structure of N170A MVM mutant empty capsid (4zpy)
STRUCTURE OF THE ADENO-ASSOCIATED VIRUS SEROTYPE 1 SIALIC ACID COMPLEX (5egc)
STRUCTURE OF ADENO-ASSOCIATED VIRUS TYPE 2 VLP (5ipi)
STRUCTURE OF THE R432A VARIANT OF ADENO-ASSOCIATED VIRUS TYPE 2 VLP (5ipk)
2.8 ELECTRON MICROSCOPY STRUCTURE OF ADENO-ASSOCIATED VIRUS-DJ BOUND BY HEPARANOID PENTASACCHARIDE (5uf6)
THE STRUCTURE OF HUMAN BOCAVIRUS 1 (5urf)
HUMAN BOCAVIRUS 3 (5us7)
By Genus
Structural annotation of pathogenic bovine Parvovirus-1 (4qc8)
THE STRUCTURE OF HUMAN BOCAVIRUS 1 (5urf)
HUMAN BOCAVIRUS 3 (5us7)
Show & Hide
Color by
Representation
Neighbors
View
 
Reset   |   Snapshot   |   Big JM   |   Full Cap

Right click inside JSmol for more options
Please
Wait