Oligomer Generator

Oligomer Generator

Click here for Detailed Instructions (1) Pick a capsid from VIPERdb: -OR- upload your own PDB (WARNING: coordinates must be in the VIPERdb convention) T-number (for upload only): (2) Would you like to generate a section of the particle? (If you have chosen to generate a section of the particle skip step 3)
(3) Select the SUBUNIT and MATRIX identifiers Select a chain ID from the pulldown, and enter a series of comma delimited matrix identifiers (1, 4, 3, etc.) or a range of matrix identifiers (1-60). OR enter a set of specific chain-matrix values. (based on the numbers in the adjacent DIAGRAM e.g. C1,B6,C7,B8,C9,B5 OR simply 1, 2, 3, etc.)

(4) Use only the C-alpha atoms? Yes No