Sequences in red contain non-standard nucleotides.
Click on the virus name to see an image.
| Virus Name |
RNA/DNA |
Sequence |
# Nucleotides |
PDB ID |
| 1. Bromoviridae |
| Cowpea Chlorotic Mottle Virus (CCMV) | RNA | R(AUAU), T(AU) | R(4), T(2) | 1cwp |
| Tomoto Aspermy Virus | RNA | R(AAA) | R(3) | 1laj |
| 2. Comoviridae |
| Bean Pod Mottle Virus, Middle Component | RNA | R(AGUCUC) | R(6) | 1pgl |
| PROTEIN-/RNA$ INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION | RNA | R() | R(0) | 1bmv |
| 3. Leviviridae |
| Bacteriophage MS2 Mutant (T59S)/RNA Operator | RNA | R(ACAUGAGGAUUACCCAUGU) | R(19) | 1aq3 |
| Bacteriophage MS2 Mutant (T45A)/RNA Operator | RNA | R(ACAUGAGGAUUACCCAUGU) | R(19) | 1aq4 |
| MS2-RNA HAIRPIN (A-5) COMPLEX | RNA | S(ACAUGAGGAUAACCCAUGU) | S(19) | 2c50 |
| Bacteriophage MS2/RNA Hairpin (4One-5) | RNA | R(ACAUGAGGA(ONE)UACCCAUGU) | R(19) | 1dzs |
| Bacteriophage MS2/RNA Hairpin (5Bru-5) | RNA | R(ACAUGAGGAUUACCCAUGU) | R(19) | 1e6t |
| Bacteriophage MS2/RNA Hairpin (2One-5) | RNA | R(ACAUGAGGAU(PYO)ACCCAUGU) | R(19) | 1e7x |
| Bacteriophage MS2/RNA Hairpin (C-7) | RNA | R(ACAUGAGGCUCACCCAUGU) | R(19) | 1gkv |
| Bacteriophage MS2/RNA Hairpin (G-10) | RNA | R(ACAUCGCGAUUACGGAUGU) | R(19) | 1gkw |
| Bacteriophage MS2/RNA Hairpin (G-5) | RNA | R(ACAUGAGGAUGACCCAUGU) | R(19) | 1h8j |
| Bacteriophage MS2/RNA Hairpin (Ade-5) | RNA | R(ACAUGAGGAUAACCCAUGU) | R(19) | 1he6 |
| Bacteriophage MS2/RNA Hairpin (C-10) | RNA | R(ACAUGCGGAUCACCCAUGU) | R(19) | 1kuo |
| Bacteriophage MS2/19 nt. MS2 RNA Fragment | RNA | R(ACAUGAGGAUCACCCAUGU) | R(19) | 1zdh |
| Bacteriophage MS2/19 nt. MS2 RNA Fragment | RNA | R(ACAUGAGGAUUACCCAUGU) | R(19) | 1zdi |
| Bacteriophage MS2/8 nt. MS2 RNA Fragment | RNA | R(GGAUCACC) | R(8) | 1zdj |
| Bacteriophage MS2/23 nt. MS2 RNA Fragment | RNA | R(ACAUGAGGAUCACCCAUGU) | R(19) | 1zdk |
| Bacteriophage MS2/RNA Aptamer F5 | RNA | R(CCGGAGGAUCACCACGGG) | R(18) | 5msf |
| Bacteriophage MS2/RNA Aptamer F6 | RNA | R(CCACAGUCACUGGG), S(CAGUCACUGG) | R(14), S(10) | 6msf |
| Bacteriophage MS2/RNA Aptamer F7 | RNA | R(UCGCCAACAGGCGG) | R(14) | 7msf |
| Bacteriophage MS2/RNA Aptamer F5 (2-aminopurine at -10 pos.) | DNA | R(CCGG(2PR)GGAUCACCACGG) | R(17) | 1u1y |
| Bacteriophage MS2/RNA Hairpin (5bru-5) Complex | RNA | R(CAUGAGGAU(5BU)ACCCAUG) | R(17) | 2bu1 |
| MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX | RNA | S(ACAUGAGGAU(SUR)ACCCAUGU) | S(19) | 2c4y |
| MS2-RNA HAIRPIN (G-5) COMPLEX | RNA | S(ACAUGAGGAUGACCCAUGU) | S(19) | 2c51 |
| MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsid | RNA | S(ACAUGAGGAUUACCCAUGU) | S(19) | 2b2g |
| RNA stemloop operator from bacteriophage QBETA complexed with an N87S,E89K mutant MS2 capsid | RNA | S(AUGCAUGUCUAAGACAGCAU) | S(20) | 2b2d |
| RNA stemloop from bacteriophage Qbeta complexed with an N87S mutant MS2 Capsid | RNA | R(AUGCAUGUCUAAGACAGCAU) | R(20) | 1zse |
| MS2-RNA HAIRPIN (2SU-5-6) COMPLEX | RNA | S(ACAUGAGGA(SUR)(SUR)ACCCAUGU) | S(19) | 2c4z |
| RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsid | RNA | S(ACAUGAGGAUUACCCAUGU) | S(19) | 2b2e |
| 4. Microviridae |
| Bacteriophage α3 | DNA | X(CCCC) | X(4) | 1m06 |
| Φ-X 174 DNA binding protein J | DNA | X(CAAA) | X(4) | 1rb8 |
| Bacteriophage Φ-X 174 | DNA | N(AAAAC) | N(5) | 2bpa |
| 5. NA |
| RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsid | RNA | S(ACAUGAGGAUUACCCAUGU) | S(19) | 3dum |
| PROTEIN-/RNA$ INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION | RNA | R() | R(0) | 2jun |
| PROTEIN-/RNA$ INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION | RNA | A() | A(0) | 1jun |
| 6. Nodaviridae |
| Crystal structure of Flock House N363T mutant | RNA | R(CCUCUUUUAUCU) | R(12) | 2q23 |
| Pariacoto Virus (PAV) | RNA | R(UUUUUUUUUUUUUAAAAUUUUUUUU) | R(25) | 1f8v |
| Black Beetle Virus (BBV) | RNA | R(UCUUAUAUCU) | R(10) | 2bbv |
| Flock House Virus | RNA | R(UCUUUUAUCU) | R(10) | fhv |
| Flock House Virus Coat protein D75N mutant | RNA | R(CCUCUUUUAUCU) | R(12) | 2q25 |
| FHV VIRUS LIKE PARTICLE | RNA | R() | R(0) | 2q26 |
| CRYSTAL STRUCTURE OF FLOCK HOUSE VIRUS | RNA | R() | R(0) | 2z2q |
| 7. Parvoviridae |
| Canine Parvovirus Strain D, Mutant A300D | DNA | R(CCACCCCAA), S(AC) | R(9), S(2) | 1ijs |
| Mice Minute Virus (MVM), Strain I | DNA | R(CCACCCCAACA), S(CAAA), T(A) | R(11), S(4), T(1) | 1mvm |
| Canine Parvovirus | DNA | R(NTACCTCTTGC) | R(11) | 1p5w |
| Canine Parvovirus Strain D | DNA | N(ATACCTCTTGC) | N(11) | 4dpv |
| 8. Satellites |
| Satellite Tobacco Mosaic Virus | RNA | R(AAAAAAAAAA), S(UUUUUUUUUU), T(U) | R(10), S(10), T(1) | 1a34 |
| 9. Tymoviridae |
| Desmodium Yellow Mottle Virus (DYMV) | RNA | R(UUUUUUU), S(UU) | R(7), S(2) | 1ddl |
| Structure of Turnip Yellow Mosaic Virus at 100 K | RNA | D(CCC) | D(3) | 2fz2 |
