Feedback Form
{pdb_id}

Secondary Structure Information

Note: All ordered residues are displayed.

Select Virus:  

Or enter PDB ID of virus:  

Chain ID:  

Start Residue:  

End Residue:   

 

Secondary structure assignments calculated using Stride.

   1.  Frishman,D & Argos,P. (1995) Knowledge-based secondary structure
       assignment.  Proteins:  structure, function and genetics, in the
       press.
                                                                                
   2.  Kabsch,W. & Sander,C. (1983)  Dictionary  of  protein  secondary
       structure:    pattern   recognition   of hydrogen-bonded   and
       geometrical features. Biopolymers, 22: 2577-2637.
                                                                                
   3.  Eisenhaber,  F.  and  Argos,  P.  (1993)  Improved  strategy  in
       analytic  surface calculation for molecular systems: handling of
       singularities and computational efficiency. J. comput. Chem. 14,
       1272-1280.
                                                                                
   4.  Eisenhaber, F., Lijnzaad, P., Argos, P., Sander, C., and Scharf,
       M.  (1995) The double cubic lattice method: efficient approaches
       to numerical integration of surface area and volume and  to  dot
       surface contouring of molecular assemblies. J. comput. Chem. 16,
       273-284.
                                                                                
   5.  Bernstein, F.C., Koetzle, T.F.,  Williams,  G.J.,  Meyer,  E.F.,
       Brice,  M.D.,  Rodgers,  J.R., Kennard, O., Shimanouchi, T., and
       Tasumi, M.  (1977)  The  protein  data  bank:  a  computer-based
       archival  file for macromolecular structures. J. Mol. Biol. 112,
       535-542.
                                                                                
   6.  Kraulis, P.J.  (1991)  MOLSCRIPT:  a  program  to  produce  both
       detailed  and  schematic  plots  of protein structures. J. Appl.
       Cryst. 24, 946-950.
                                                                                
   7.  Pearson, W.R. (1990) Rapid  and  sensitive  sequence  comparison
       with FASTP and FASTA. Methods. Enzymol. 183, 63-98.



Main | Data & Analysis | Utilities | Search | Contact Us | Help | Links | Mailing List | Cite VIPERdb | Disclaimer

©1998-2016. TSRI. All rights Reserved.