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Apply these coordinate matrices to the icosahedral asymmetric subunit of a virus in order to create the entire capsid. You can use all 60 matrices, or
select the matrices that correspond to the T-number of a particular virus.
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Create either part or all of a virus capsid from a given virus subunit.
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Detailed information regarding the construction of icosahedra using different quasi-equivalent surfaces lattices, as well as downloadable projection files of the icosahedra.
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Select a particular residue and view its location in the protein structure using the Virtual Reality Markup Language viewer.
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Submit your structure coordinates for VIPERdb analysis.
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This tool generates galleries of particular types of images available in the VIPERdb for a group of capsids within and between families/genera, which can be further ordered by their size. This tool replaces the "visual_viper" tool.
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Contact finder is a new utility that extracts chosen types residue pairs (e.g., ALA-PHE, ASP-LYS ..)from the VIPERdb database that are in contact at the subunit interfaces and within the specified distance limits. The search can be tailored to a particular virus/genus/family.
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Returns contact and association energy information for a particular amino acid within a capsid.
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