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Crystal Information for VIPERdb Entries

Crystallization Crystal Info Space Groups Crystal Contacts
Virus Name Family or
Group
T# Space Group Unit Cell Param.  Z  R-
factor
Res
Adeno-Associated Virus Parvoviridae 1 P1 249.690, 249.690, 644.760, 90.00, 101.16, 120.00 3 0.338
Reference: 1
Bacteriophage Φ-X 174 Microviridae 1 P21 305.580, 360.780, 299.460, 90.00, 92.89, 90.00 2 0.209
Reference: 79
Bacteriophage FR (FR) Leviviridae 3 C2 422.900, 305.900, 274.800, 90.00, 129.80, 90.00 2 0.228
Reference: 76
Bacteriophage G4 Microviridae 1 P6322 414.200, 414.200, 263.000, 90.00, 90.00, 120.00 2 0.352
Reference: 4
Bacteriophage GA Protein Capsid (GA) Leviviridae 3 I222 272.700, 293.500, 339.300, 90.00, 90.00, 90.00 2 0.279
Reference: 5
Bacteriophage MS2 (MS2) Leviviridae 3 R32 288.000, 288.000, 653.000, 90.00, 90.00, 120.00 3 0.189
Reference: 78
Bacteriophage PP7 Leviviridae 3 P1 285.000, 324.000, 380.000, 88.40, 88.10, 87.70 2 0.288
Reference: 9
Bacteriophage Qβ Capsid (QB) Leviviridae 3 C2221 477.800, 295.200, 477.800, 90.00, 90.00, 90.00 4 0.304
Reference: 10
Black Beetle Virus (BBV) Nodaviridae 3 P4232 362.000, 362.000, 362.000, 90.00, 90.00, 90.00 2 0.221
Reference: 81
Bluetongue Virus Reoviridae 13 P21212 795.600, 821.800, 753.300, 90.00, 90.00, 90.00 2 0.266
Reference: 83
Bovine Enterovirus VG-5-27 Picornaviridae pT3 P21 388.200, 392.600, 360.700, 90.00, 112.70, 90.00 2 0.225
Reference: 13
Canine Parvovirus Parvoviridae 1 P43212 254.500, 254.500, 795.000, 90.00, 90.00, 90.00 4 0.211
Reference: 14
Carnation Mottle Virus Tombusviridae 3 I23 382.600, 382.600, 382.600, 90.00, 90.00, 90.00 2 0.183
Reference: 15
Cocksfoot Mottle Virus Sobemovirus 3 P212121 291.069, 537.250, 555.158, 90.00, 90.00, 90.00 - 0.281
Reference: 16
Cowpea Chlorotic Mottle Virus (CCMV) Bromoviridae 3 P212121 381.300, 381.300, 408.600, 90.00, 90.00, 90.00 4 0.310
Reference: 17
Cowpea Mosaic Virus secoviridae pT3 I23 317.000, 317.000, 317.000, 90.00, 90.00, 90.00 2 0.188
Reference: 18
Coxsackievirus B3 Coat Protein Picornaviridae pT3 P21 574.620, 302.070, 521.610, 90.00, 107.70, 90.00 4 0.264
Reference: 19
Cricket Paralysis Virus Dicistroviridae pT3 I222 330.000, 334.000, 395.000, 90.00, 90.00, 90.00 - 0.228
Reference: 20
CRYSTAL STRUCTURE ANALYSIS OF NORWALK VIRUS CAPSID Caliciviridae 3 P42212 605.700, 605.700, 466.700, 90.00, 90.00, 90.00 4 0.260
Reference: 82
Cucumber Mosaic Virus (CMV) Bromoviridae 3 P23 336.000, 336.000, 336.000, 90.00, 90.00, 90.00 2 0.246
Reference: 21
Desmodium Yellow Mottle Virus (DYMV) Tymoviridae 3 P4232 348.550, 348.550, 348.550, 90.00, 90.00, 90.00 2 0.151
Reference: 23
Echovirus 1 (FAROUK Strain) Picornaviridae pT3 P22121 472.150, 483.200, 352.450, 90.00, 90.00, 90.00 4 0.263
Reference: 24
Echovirus 11 (Strain 207) Picornaviridae pT3 R32 300.850, 300.850, 1476.620, 90.00, 90.00, 120.00 - 0.246
Reference: 25
Feline Panleukopenia Virus Parvoviridae 1 P21 254.150, 253.960, 380.290, 90.00, 90.00, 90.00 - 0.288
Reference: 27
Feline Panleukopenia Virus Parvoviridae 1 P212121 380.100, 379.300, 350.900, 90.00, 90.00, 90.00 4 -
Reference: 26
Foot and Mouth Disease Virus (FMDV) Picornaviridae pT3 I23 345.000, 345.000, 345.000, 90.00, 90.00, 90.00 2 0.169
Reference: 84
Human Hepatitis B Viral Capsid Hepadnaviridae 4 C2 538.400, 354.800, 37.100, 90.00, 132.30, 90.00 2 0.271
Reference: 85
Human Papilloma Virus 16 L1 Capsid Papillomaviridae 1 P213 387.000, 387.000, 387.000, 90.00, 90.00, 90.00 - 0.280
Reference: 31
Human Rhinovirus 16 Picornaviridae pT3 P22121 362.600, 347.100, 334.900, 90.00, 90.00, 90.00 4 0.23
Reference: 88
Human Rhinovirus 2 Picornaviridae pT3 I222 308.680, 352.980, 380.480, 90.00, 90.00, 90.00 2 0.180
Reference: 86
Human Rhinovirus 3 Picornaviridae pT3 P21221 397.900, 341.800, 301.700, 90.00, 90.00, 90.00 2 0.284
Reference: 36
Human Rhinovirus Serotype 14 Picornaviridae pT3 P213 445.100, 445.100, 445.100, 90.00, 90.00, 90.00 4 0.16
Reference: 87
Human Rhinovirus Serotype 1A Picornaviridae pT3 P6322 341.300, 341.300, 465.900, 90.00, 90.00, 120.00 2 0.293
Reference: 34
L-A Virus Totiviridae 1 P21 406.700, 403.300, 572.500, 90.00, 90.30, 90.00 2 -
Reference: 37
Mengo Encephalomyocarditis Virus Picornaviridae pT3 P212121 441.420, 427.310, 421.920, 90.00, 90.00, 90.00 4 0.221
Reference: 89
Mice Minute Virus (MVM), Strain I Parvoviridae 1 C2 448.700, 416.700, 305.300, 90.00, 95.80, 90.00 4 -
Reference: 39
Murine Polyoma Virus Polyomaviridae 7d I23 570.000, 570.000, 570.000, 90.00, 90.00, 90.00 2 0.236
Reference: 40
NODAMURA VIRUS Nodaviridae 3 P21 562.090, 354.130, 612.770, 90.00, 110.89, 90.00 4 0.296
Reference: 41
Pariacoto Virus (PAV) Nodaviridae 3 P21 329.300, 346.900, 424.900, 90.00, 90.80, 90.00 2 0.219
Reference: 43
PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA Parvoviridae 1 P41212 264.440, 264.440, 683.450, 90.00, 90.00, 90.00 4 0.271
Reference: 22
Physalis Mottle Virus (PhMV) Tymoviridae 3 R3 294.650, 294.650, 294.650, 59.91, 59.91, 59.90 1 0.326
Reference: 44
Poliovirus (Type 1, Mahoney Strain) Picornaviridae pT3 P21212 320.150, 355.550, 377.800, 90.00, 90.00, 90.00 2 0.253
Reference: 93
Poliovirus Type 1 (Mahoney Strain) Picornaviridae pT3 P21212 322.940, 358.040, 380.150, 90.00, 90.00, 90.00 2 0.20
Reference: 91
Poliovirus Type 1 (Mahoney Strain) Empty Capsid Picornaviridae pT3 P21212 322.900, 358.000, 380.100, 90.00, 90.00, 90.00 2 0.281
Reference: 92
Poliovirus Type 3 (Sabin Strain) Picornaviridae pT3 I222 321.060, 358.620, 381.820, 90.00, 90.00, 90.00 2 0.205
Reference:
Poliovirus Type2/Sch48973 Complex Picornaviridae pT3 C2221 345.700, 497.200, 485.900, 90.00, 90.00, 90.00 4 0.185
Reference: 46
Porcine Parvovirus Parvoviridae 1 P21212 442.490, 443.050, 251.310, 90.00, 90.00, 90.00 4 0.286
Reference: 47
Reovirus Core Reoviridae 2 F432 1255.000, 1255.000, 1255.000, 90.00, 90.00, 90.00 2 0.206
Reference: 49
Rice Dwarf Virus Reoviridae 13 I222 770.000, 795.000, 814.000, 90.00, 90.00, 90.00 2 0.303
Reference: 94
Rice Yellow Mottle Virus Sobemovirus 3 P21 283.500, 401.800, 284.000, 90.00, 89.40, 90.00 2 0.227
Reference: 51
Satellite Panicum Mosaic Virus Satellites 1 P4232 183.000, 183.000, 183.000, 90.00, 90.00, 90.00 2 0.210
Reference: 52
SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX Satellites 1 I222 174.270, 191.770, 202.500, 90.00, 90.00, 90.00 2 0.179
Reference: 95
Satellite Tobacco Necrosis Virus Satellites 1 C2 317.270, 304.030, 184.600, 90.00, 94.36, 90.00 4 -
Reference: 97
Sesbania Mosaic Virus (SMV) Sobemovirus 3 R3 291.460, 291.460, 291.460, 61.95, 61.95, 61.95 1 0.227
Reference: 55
Simian Virus 40 Polyomaviridae 7d I23 558.000, 558.000, 558.000, 90.00, 90.00, 90.00 2 0.257
Reference: 98
Southern Bean Mosaic Virus (SBMV) Sobemovirus 3 R32 334.300, 334.300, 757.500, 90.00, 90.00, 120.00 6 0.254
Reference: 97
STRUCTURE OF THE DSDNA BACTERIOPHAGE HK97 MATURE EMPTY CAPSID Siphoviridae 7l P21 581.220, 628.350, 789.450, 90.00, 90.06, 90.00 2 -
Reference: 77
Swine Vesicular Disease Virus Picornaviridae pT3 P22121 354.100, 371.700, 318.600, 90.00, 90.00, 90.00 - 0.245
Reference: 58
Theiler's Murine Encephalomyelitis Virus (BeAn Strain) Picornaviridae pT3 P4322 331.860, 331.860, 796.260, 90.00, 90.00, 90.00 4 -
Reference: 59
Theiler's Murine Encephalomyelitis Virus (DA Strain) Picornaviridae pT3 P212121 360.500, 338.400, 348.100, 90.00, 90.00, 90.00 2 0.300
Reference: 60
Tobacco Necrosis Virus (TNV) Tombusviridae 3 P4232 336.400, 336.400, 336.400, 90.00, 90.00, 90.00 2 0.253
Reference: 99
Tobacco Ringspot Virus secoviridae pT3 C2 407.060, 399.680, 285.970, 90.00, 129.10, 90.00 4 0.269
Reference: 100
Tomato Aspermy Virus Bromoviridae 3 I222 294.296, 327.393, 382.066, 90.00, 90.00, 90.00 2 0.218
Reference: 63
Tomato Bushy Stunt Virus (TBSV) Tombusviridae 3 I23 383.200, 383.200, 383.200, 90.00, 90.00, 90.00 2 -
Reference: 64
Turnip Yellow Mosaic Virus (TYMV) Tymoviridae 3 P6422 515.500, 515.500, 309.500, 90.00, 90.00, 120.00 3 0.187
Reference: 65


*: Vm(prot) = unitcell volume / (Number of particles per unitcell * molecular weight of protein shell)
The values given here are based on molecular weight of virus protein shell alone (nucleic acid information NOT used).





by Padmaja Natarajan
Last Modified : Mon Jan 7 17:46:50 PST 2002




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